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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaatgacctatctttctaagtattcatctttctttattaataatggttttatatatgtttcatctttatctgctttcattgtttgttttggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGAGTACCAGAATATTCCTTGTTTCTCTTAAT

Basic information

species Glycine max
transcript GLYMA08G22410.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22410.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
-ttgaatga--cctatctttctaagtattcatctttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGAGTACCAGAATATTCCTTGTTTCTCTTAAT
 |   ||||  ||| |  || | |||     || | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| |                                 
ttaagatgatgcctgttctttttagt-----tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180089|gb|HO025304.1|HO025304
EST:     GAAGGAATATTCTTGAAATAAACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|7924358|gb|AW830384.1|AW830384
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|23729970|gb|BU763091.1|BU763091
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|22540930|gb|BU090773.1|BU090773
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAATCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGTATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|16346699|gb|BI972294.1|BI972294
EST:     GAAGGAATATTCTTGAAATATACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGACAAATCTTACTATGATAAAATGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|15338027|gb|BI498683.1|BI498683
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|4290153|gb|AI438028.1|AI438028
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|4313609|gb|AI460728.1|AI460728
EST:     AAGGAATATTCTTGAAATAGACCATTCCC-AAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGT
genomic: AAGGAATATTCTTGAAATAGACCAT-CCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttatatatgtttcatctttatctgctttcattgtttgttttggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGAGTACCAGAATATTCCTTGTTTCTCTTAAT
                                      tttgtttt  CT-rich tract
     ttatatatgtttcatc  TA-rich tract