1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtttgtagctattctcttgtcaaaactcggatgtgattgtgccttgttcatattgttgtttatgttttgctggtcttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTAAAAGTATTAGCCATGTCATCATTGGATTGAAGACAGTGAAAGGAACAA
species | Glycine max |
transcript | GLYMA08G21830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTEST: gi|193731403|gb|FK663549.1|FK663549
genomic: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTEST: gi|208123606|gb|GD924508.1|GD924508
genomic: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAAEST: gi|208196695|gb|GD995802.1|GD995802
genomic: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAA
EST: ATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGGGAGCGTAACAGGTGGTTATGGTEST: gi|207806666|gb|GD779983.1|GD779983
genomic: ATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTEST: gi|7685128|gb|AW755776.1|AW755776
genomic: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCATAAGAAACTGAGAGCGTAACATGTGGTTATGGTEST: gi|208168784|gb|GD969208.1|GD969208
genomic: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: ATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGGGAGCGTAACAGGTGGTTATGGTEST: gi|151406331|gb|EV276146.1|EV276146
genomic: ATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: AAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTEST: gi|208336878|gb|GE135562.1|GE135562
genomic: AAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
EST: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAG GTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
genomic: GGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATACGAAGGGGAGgtgagtttgt ... cttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGT
gatgtgattgtgccttgttcatattgttgtttatgttttgctggtcttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTAAAAGTATTAGCCATGTCATCATTGGATTGAAGACAGTGAAAGGAACAA
tcttgttt CT-rich tract
atattgttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttgtagctattctcttgtcaaaactcggatgtgattgtgccttgttcatattgttgtttatgttttgctggtcttgtttaagGTCACCGAGCTCTCTCCAGAAGAAACTGAGAGCGTAACAGGTGGTTATGGTAAAAGTATTAGCCATGTCATCATTGGATTGAAGACAGTGAAAGGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA