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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaatatatattactccaatagaaaataataacaacagtaattactactattaatatattataattaaaattatactaataagtcgagtgaattattattttaaattatcatcaggtacatactgtgttggctttatcacaataaagaatcctaattatttaaattctttctttttttgtgatggattgcagCATAGGAGCCAAAAAGGTGAAAACAGAGTGTAATCTGTTCAGAGAATATTGCAGGGCAGGAAATGCAGAAGG

Basic information

species Glycine max
transcript GLYMA08G21510.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21510.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g03520.t01 (Vitis vinifera), 3'ss of exon 3
gtaaattaatatatattactccaatagaaaataataacaacagtaattactactattaatatattataattaaaattatactaataagtcgagtgaattattattttaaattatcatcaggtacatactgtgttggctttatcacaataaagaatcctaattatttaaattctttctttttttgtgatggattgcagCATAGGAGCCAAAAAGGTGAAAACAGAGTGTAATCTGTTCAGAGAATATTGCAGGGCAGGAAATGCAGAAGG
                               |||||| |  | ||||||  | |   | || |||| ||||  ||  | ||  ||||  | | |     |||  |||||  ||||| || | | || |||| |||  ||      || ||| ||| |                  |||||||| | || |  |||||||| |||||||||||||| ||    || || |  ||||| ||||||||||||| ||||||||||| ||||||
------------------------------gtaataaaa--aataatta--aattaaattaaattaaaattttaaaaaaacccataaaacaaat-----attcatttaaggtatcaccaagaatattctgtcttgtttt------aacaaataattcc-----------------ctttttttcttattggatgcagCATTGGAGCCAAAAAGGTAAAGGGTGAATGCACACTGTTTAGAGAATATTGCAAGGCAGGAAATGGAGAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaataaagaatcctaattatttaaattctttctttttttgtgatggattgcagCATAGGAGCCAAAAAGGTGAAAACAGAGTGTAATCTGTTCAGAGAATATTGCAGGGCAGGAAATGCAGAAGG
            tcctaat  putative branch site (score: 2)
     taaagaatcctaatta  TA-rich tract