1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taattttcattttatatatgatttagtttttactagaaaactgtgattggcatcaatggctgcttttatgcgattcttttttaatgtgtttgcttggcagCATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACAC
species | Glycine max |
transcript | GLYMA08G21460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGAGGATAATGAAGGGGACAGGATGCTTGTTGGAGATGTGCCGTGGCA CATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTEST: gi|192301468|gb|FG994092.1|FG994092
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCA CATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTEST: gi|209722517|gb|BW682615.1|BW682615
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCT
EST: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCA CATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCT
genomic: TATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCAgtaagcatct ... tgcttggcagCATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCT
attggcatcaatggctgcttttatgcgattcttttttaatgtgtttgcttggcagCATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACAC
ttttaat putative branch site (score: 3)
tttgctt putative PPT
attcttttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattttcattttatatatgatttagtttttactagaaaactgtgattggcatcaatggctgcttttatgcgattcttttttaatgtgtttgcttggcagCATGTTTGTATCGACGGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - aactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttatgc