Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcatataccaattaagaagtttcttttatttttattaattgggattaattattatgattcattctattcattctaaagtttttttaaaaccatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAGAGGATGATCTATCTTGGTGATGGTAGTGGTGACTATTGCCCAAGCTTGA

Basic information

species Glycine max
transcript GLYMA08G20820.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304348|gb|FG996460.1|FG996460
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|9258334|gb|BE346481.1|BE346481
EST:     TCAACAAAGCTTGCCATGGCTGCACTATGTGTCCTGCAAATATGTGCCAG                         GGTTTAATCATTGATAGAATCCAAGATTCAAT
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAAT
EST: gi|192294661|gb|FG986510.1|FG986510
EST:     CAACAAAGCTTCCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: CAACAAAGCTTCCC-ATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|51338133|gb|CO981999.1|CO981999
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|9259860|gb|BE348007.1|BE348007
EST:     TCAACAAAGCTTCCCATGGCTGCACTNTGTGTCCTCCAAATATGTGCAAG                         GGTGTAATCATTGATAGAATCCAAGATTCAATGTCACAATAAGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|5770626|gb|AI973800.1|AI973800
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|8670193|gb|BE191300.1|BE191300
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|9205184|gb|BE331408.1|BE331408
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAAGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|9258289|gb|BE346436.1|BE346436
EST:     TCAACAAAGCTTCCCATGGCTGCACTNTGTGTCCTCCAAATATGTGCAAG                         GGTCTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAAGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|7638852|gb|AW733245.1|AW733245
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|9204888|gb|BE331112.1|BE331112
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
EST: gi|209709143|gb|BW683990.1|BW683990
EST:     TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAG                         GGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG
genomic: TCAACAAAGCTTCCCATGGCTGCACTTTGTGTCCTCCAAATATGTGCAAGgtaaatacaa ... accatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaattattatgattcattctattcattctaaagtttttttaaaaccatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAGAGGATGATCTATCTTGGTGATGGTAGTGGTGACTATTGCCCAAGCTTGA
                           ttctaaa  putative branch site (score: 2)
                                              ccatttc  putative PPT
                 attctattcattctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttcatataccaattaagaagtttcttttatttttattaattgggattaattattatgattcattctattcattctaaagtttttttaaaaccatttcagGGTTTAATCATTGATAGAATCCAAGATTCAATTTCACAAGAGGGTAACAAGAGGATGATCTATCTTGGTGATGGTAGTGGTGACTATTGCCCAAGCTTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- -catatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcattc