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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA

Basic information

species Glycine max
transcript GLYMA08G20780.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA
                      | || | || |   ||  ||   |||      | | |  ||| | |   |||  |  | ||| ||     |  ||  ||    ||||  || ||  |||||||| |  || | |||  |  | || || ||||| || ||| ||||||||||||||||||| || || || ||||| ||||||||||| || |||||    |
---------------------gtaagcaaatca-gccaccaagactgac---tttcacttttttcattagatatacatttgtttgttccaaatgtttcctttacgttgtccaattg--aaacagGTAAAGGTCTTTGGGTCCATCGCTTATGTTTCTCAGACTTCTTGGATCCAAAGTGGTACCATCCGGGACAATATCCTCTATGGAAAGCCCATGGAAAGTA

upper sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA
                                      | |      || | | ||||||   |  || | |   ||| |  | ||||  |  | |||||| | ||| ||    | | |||||||||  ||||| |||  |  ||||||| ||||| |||||| |||||||||||||||| || |||||||| || |||||||| |||||||||||||||  ||
-------------------------------------gtgagttgcaaaaccatttagtatcatagatcatttacaaatt--tgatttgctaatttttttttcccttctgctggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA

upper sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA
                                      | |      ||   | |||||  | |  || | |   ||| |  ||  ||| |     |||||   ||| |||   | | ||||||||   ||| |  ||  |  ||||||| ||||| || ||| |||||||||||||||| || ||||| || || ||||||| ||||||||||||||||  ||
-------------------------------------gtgagttgcaaaatcatttagtgttatagatcatttacaaatttgtt--ttactacatgttttt---cttctgatggttgcaaacagGTCGATGTGTTCGGTTCCATTGCCTATGTTTCTCAGACTTCTTGGATCCAAAGTGGGACGATTCGCGACAACATTCTCTGTGGAAAACCAATGGATACAA

upper sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA
                                      | |      ||||   |||||| | || || |     |||   ||| |||   |   |||||| ||  |||     | |  ||||||||  ||||| |||  || | ||||| ||||| |||||| |||||||||||||||| |||||||| || || ||||| |||||||  ||||||||| |||
-------------------------------------gtgagttgcaaagccctttagtattattgatcatctacaaa---tttgtttcactaaattttttccttctgttgg--ttgtcaacagGTTGATGTATTTGGTTCAATCGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACAATTCGCGACAACATTCTTTATGGAAGGCCAATGGATAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA
     taaactctttatttat  TA-rich tract