1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctaaacaattggtcacacttaccagtaattttgtctacttaatgctattaaattcacaatgatttggtttgtagccaacatgttgccactattactgcagGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATAGCTAATCTG
species | Glycine max |
transcript | GLYMA08G19730.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAG GCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAEST: gi|31463706|gb|CD405734.1|CD405734
genomic: TGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagt ... attactgcagGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAA
EST: TGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAG GCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTT
genomic: TGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagt ... attactgcagGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTT
tattaaattcacaatgatttggtttgtagccaacatgttgccactattactgcagGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATAGCTAATCTG
aatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaacaattggtcacacttaccagtaattttgtctacttaatgctattaaattcacaatgatttggtttgtagccaacatgttgccactattactgcagGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATAGCTAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
ctaaaca
- - - - - - - -cacttac
- - - - - - - - - - - - - - - - - - - ttaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccact