1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccttccgtcattaatcttgcgtaacaaacatagcataagcctctattgctttaatgagatctgtatatatgagaatgctaatattcttttatctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAACGCTTGCAGTTATTGGAGGACCTAAAACATCTAGCTTATCCTTGTGACA
species | Glycine max |
transcript | GLYMA08G18780.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCTAACTTTTCTTAGAAG TCCTCCAACATCCAAACCATAGAAGCAGAAAGTTGGAAGCAGAGAATGAAAEST: gi|27425344|gb|CA936864.1|CA936864
genomic: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGgtatgcttac ... atctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
EST: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAG TCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAAEST: gi|31310639|gb|CD395842.1|CD395842
genomic: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGgtatgcttac ... atctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
EST: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAG TCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
genomic: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGgtatgcttac ... atctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
ttgctttaatgagatctgtatatatgagaatgctaatattcttttatctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAACGCTTGCAGTTATTGGAGGACCTAAAACATCTAGCTTATCCTTGTGACA
tgctaat putative branch site (score: 2)
ttcttttatct CT-rich tract
taatattcttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttccgtcattaatcttgcgtaacaaacatagcataagcctctattgctttaatgagatctgtatatatgagaatgctaatattcttttatctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAACGCTTGCAGTTATTGGAGGACCTAAAACATCTAGCTTATCCTTGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA