Sequence
atgc intronic sequence ATGC exonic sequencegtaagctttagtatatgaacaaaattactgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
Basic information
species | Glycine max |
transcript | GLYMA08G18410.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G18410.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G65700.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtaagctttagtatatgaacaaaatta---ctgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
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gtatgttatactctcttgtgtgatatctggtttagaactccttatgtcaatgcaagtatcttagtaaagagatcgattttta-----tattttttcagGGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG
upper sequence: GLYMA08G18410.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0039g00240.t01 (Vitis vinifera), 3'ss of exon 3
gtaagctttagtatat-gaacaaaattactgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
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-----gtatgttatatagaattaattcaatgcagtgacagcattttttatggtaggtctatattgtattgacattggttttccgtttagGGAGTTCTAAAGGGCTTTGACCAGGCTACCAATATCATTCTTGATGAATCTCATGAGCGTGTTTACTCCACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151406500|gb|EV276315.1|EV276315EST: TCATTACAAATGATGGACGAAATATAGTG GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: TCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
ttctaat putative branch site (score: 2)
cttttttgttc putative PPT
taattacaat TA-rich tract