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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttagtatatgaacaaaattactgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG

Basic information

species Glycine max
transcript GLYMA08G18410.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18410.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G65700.1 (Arabidopsis thaliana), 3'ss of exon 3
-------gtaagctttagtatatgaacaaaatta---ctgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
        ||  || | || |   | |    |||   ||  || |||      |||| || | |     |  || | ||  |     | ||| |||||||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||| || | ||| ||||||
gtatgttatactctcttgtgtgatatctggtttagaactccttatgtcaatgcaagtatcttagtaaagagatcgattttta-----tattttttcagGGAGTTCTTAAAGGTTTTGACCAGGCTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG

upper sequence: GLYMA08G18410.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0039g00240.t01 (Vitis vinifera), 3'ss of exon 3
gtaagctttagtatat-gaacaaaattactgtttgtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
      | |  ||||| |||  || | | ||          | |   | |  | | ||||  || || | ||| || ||||  ||| ||||||| || || || ||||||||||| || ||||| ||||||||||| || ||||| || ||||| || ||||||
-----gtatgttatatagaattaattcaatgcagtgacagcattttttatggtaggtctatattgtattgacattggttttccgtttagGGAGTTCTAAAGGGCTTTGACCAGGCTACCAATATCATTCTTGATGAATCTCATGAGCGTGTTTACTCCACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820147|gb|BE555657.1|BE555657
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|6071299|gb|AW100686.1|AW100686
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|209715542|gb|BW684762.1|BW684762
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|151406500|gb|EV276315.1|EV276315
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|209726604|gb|BW666522.1|BW666522
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|209715541|gb|BW684761.1|BW684761
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|151395707|gb|EV265584.1|EV265584
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|298169812|gb|HO018436.1|HO018436
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATCATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|209721770|gb|BW666390.1|BW666390
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|20813375|gb|BQ297853.1|BQ297853
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|193538078|gb|FK494609.1|FK494609
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|209726603|gb|BW666521.1|BW666521
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
EST: gi|192297078|gb|FG992014.1|FG992014
EST:     AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTG                         GGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC
genomic: AGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGgtaagcttta ... ttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgttaataagtgtcattgctctaacttctaattacaatgcttttttgttcagGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG
                            ttctaat  putative branch site (score: 2)
                                          cttttttgttc  putative PPT
                               taattacaat  TA-rich tract