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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgccttataaacttctctatttggttttgttttgttttggcattcctgacacctccttttttattgctggatttactctttattcattgtcattttctcttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCACAACTTCCAGAAGGTGGTGTTTTGCTTCTAGAGAATGTGAGGTTCTATA

Basic information

species Glycine max
transcript GLYMA08G17600.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17600.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgtgccttataaacttctctatttggttttgttttgttttggcattcctgacacctcct--tttttattgctggatttactctttattcattgtcattttctcttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCACAACTTCCAGAAGGTGGTGTTTTGCTTCTAGAGAATGTGAGGTTCTATA
                      |||| |  | ||    ||    | |    |    ||      ||   |  |  |   || || |  ||| | |   ||| | || |||  ||||   |||||||||||||||||||| ||||||||  ||||||||||||||  ||| || |||||||||||||||||  | |||||||||||||||||  
---------------------gtttgttcctcttcctcttctagacttgcaaggtttctgaacattagcttttaaaagaacactgttctcactctg--tttgtgttaata--gGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGGACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209709349|gb|BW678893.1|BW678893
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|207776090|gb|GD747731.1|GD747731
EST:     CCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: CCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|207754681|gb|GD729304.1|GD729304
EST:     CAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: CAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|209714549|gb|BW662212.1|BW662212
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|298198247|gb|HO039786.1|HO039786
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCACAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|193365334|gb|FK332723.1|FK332723
EST:     TGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: TGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|24206138|gb|BU965391.1|BU965391
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|208209100|gb|GE003090.1|GE003090
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|213610576|gb|DB960615.1|DB960615
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|213590392|gb|DB971540.1|DB971540
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|5606888|gb|AI900986.1|AI900986
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|8402320|gb|BE057954.1|BE057954
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|213589598|gb|DB965814.1|DB965814
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|298165436|gb|HO011485.1|HO011485
EST:     ACAGTTTGAAGCCTTTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|151412432|gb|EV282244.1|EV282244
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|192295471|gb|FG987085.1|FG987085
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|213608836|gb|DB957200.1|DB957200
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|213610262|gb|DB962932.1|DB962932
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|209721583|gb|BW671724.1|BW671724
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|21600463|gb|BQ610794.1|BQ610794
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|16347493|gb|BI973088.1|BI973088
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGNGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|254341877|gb|GR853014.1|GR853014
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|298188541|gb|HO035234.1|HO035234
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
EST: gi|15661932|gb|BI699303.1|BI699303
EST:     ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG                         GTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA
genomic: ACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAGgtgtgcctta ... cttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttttttattgctggatttactctttattcattgtcattttctcttgatatagGTTACGATGGCAAATGACTCTATTGGGGAGGAAGTTGAGAAGTTGGTTGCACAACTTCCAGAAGGTGGTGTTTTGCTTCTAGAGAATGTGAGGTTCTATA
                                            tcttgat  putative branch site (score: 4)
                                 ttgtcattttctctt  CT-rich tract
                 atttactctttatt  TA-rich tract