1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaatacttgttccttttcggaatagaatggtgttttatatgtctgtattcctgtagaaaattagtattattttggggagtttcctgcaagctcttaacattaataactaaatatctcaaatttttcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCTG
species | Glycine max |
transcript | GLYMA08G17000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|208152036|gb|GD944339.1|GD944339
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|193567272|gb|FK526941.1|FK526941
genomic: GCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|9900814|gb|BE609782.1|BE609782
genomic: GGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|15286900|gb|BI470791.1|BI470791
genomic: GCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGT-CATTTCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|23052768|gb|BU577259.1|BU577259
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|15663312|gb|BI700683.1|BI700683
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|6719412|gb|AW307059.1|AW307059
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|192304648|gb|FG994940.1|FG994940
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|20075735|gb|BQ094518.1|BQ094518
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|193570031|gb|FK525774.1|FK525774
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|27425246|gb|CA936766.1|CA936766
genomic: GGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|4302114|gb|AI443287.1|AI443287
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|193453911|gb|FK419106.1|FK419106
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGEST: gi|6952276|gb|AW424344.1|AW424344
genomic: GCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAG
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|208207621|gb|GE007570.1|GE007570
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GGGCACAAGTGGGATGTAATG GTGGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAEST: gi|22540297|gb|BU090140.1|BU090140
genomic: GGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGT-GGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|208045129|gb|GD843233.1|GD843233
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|15663310|gb|BI700681.1|BI700681
genomic: GGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|208162182|gb|GD965293.1|GD965293
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|151405528|gb|EV275342.1|EV275342
genomic: GGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|22540179|gb|BU090022.1|BU090022
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGTGCACTATTCGTACAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTEST: gi|192304647|gb|FG994939.1|FG994939
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTT
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|208222573|gb|GE017378.1|GE017378
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: GGGCACAAGTTGGGTATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAEST: gi|58020333|gb|CX707075.1|CX707075
genomic: GGGCACAAG-TGGG-ATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAEST: gi|6846843|gb|AW349133.1|AW349133
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
EST: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATG GTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
genomic: TACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGgtaaaatact ... tcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAA
tttcctgcaagctcttaacattaataactaaatatctcaaatttttcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCTG
tttttcttat CT-rich tract
ttaacattaataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatacttgttccttttcggaatagaatggtgttttatatgtctgtattcctgtagaaaattagtattattttggggagtttcctgcaagctcttaacattaataactaaatatctcaaatttttcttatgcagGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCTG
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