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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttagattgtaattatttggatccatctttaatcagctgctgtcaagcataatcactttttactcctccaaatgagcagTACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 7
gtatgttagattgtaattatttggatccatctttaatcagctgctgtcaagcataatcacttt-ttactcctccaaatgagcagTACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG
||| | |    || |      |   |     || |||    | |      | ||  |     | ||| ||||  |||||||||||||||||||||||||||| |||| ||   ||||||||| |||||||||| | | ||||  |||| ||| |||||||| ||
gtaaggtgatgtgaagaagccttccttgcgtttcaatttctttcctctgggtatccttgtcatattattcct--aaatgagcagTACCGCTGGATTGCATATTTGTCGATCGCTATTGGATGCTGCTTTGTGGCCATTTTTCTCCTTGGAACAAAAGAGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274169|gb|BF324537.1|BF324537
EST:     GATGTTGAAAATCAG                         TACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGC
genomic: GATGTTGAAAATCAGgtatgttaga ... aaatgagcagTACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGC
EST: gi|6667043|gb|AW278502.1|AW278502
EST:     TAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAG                         TACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGC
genomic: TAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAGgtatgttaga ... aaatgagcagTACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGC
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     TAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAG                         TACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGC
genomic: TAGTATTCAGTGTCATCAATGGAAAAACACATGATGATGTTGAAAATCAGgtatgttaga ... aaatgagcagTACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttaatcagctgctgtcaagcataatcactttttactcctccaaatgagcagTACCGCTGGATTGCATATCTGTCAATTTTTATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG
  ctttaat  putative branch site (score: 4)
                               ctttttactcctcca  putative PPT
                        ataatcacttttta  TA-rich tract