1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tagctctgcattttctattttggtctttcccctggatggataattgtttattgccccttgcatgtgattgattactttttctcccataactccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCATACTATGGG
species | Glycine max |
transcript | GLYMA08G16150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAG CATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAEST: gi|27446346|gb|CA953469.1|CA953469
genomic: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGgtatgaaata ... tccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTA
EST: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAG CATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAEST: gi|27426701|gb|CA938221.1|CA938221
genomic: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGgtatgaaata ... tccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTA
EST: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAG CATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAEST: gi|17519500|gb|BM188542.1|BM188542
genomic: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGgtatgaaata ... tccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTA
EST: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAG CATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTA
genomic: TGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGgtatgaaata ... tccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTA
gtttattgccccttgcatgtgattgattactttttctcccataactccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCATACTATGGG
ccataac putative branch site (score: 3)
ttactttttctcccat CT-rich tract
attgattacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctctgcattttctattttggtctttcccctggatggataattgtttattgccccttgcatgtgattgattactttttctcccataactccttttcagCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCATACTATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -ctctgca
- - - - - - - - - - - - -tttcccc
- - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt