1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttcgttgggattgttttagtgtgattgtgttggtggagcaatttgtatgttagtttgtcgtggcttgtgtgatgaatagatgtagacgtcttatggcgcttcttgtttggtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG
species | Glycine max |
transcript | GLYMA08G16030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG GTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATCEST: gi|209697322|gb|BW655563.1|BW655563
genomic: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGgtgagttttc ... gtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATC
EST: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG GTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATCEST: gi|192326902|gb|FK015144.1|FK015144
genomic: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGgtgagttttc ... gtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATC
EST: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG GTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAAGTATCEST: gi|254336247|gb|GR842426.1|GR842426
genomic: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGgtgagttttc ... gtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATC
EST: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG GTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATC
genomic: TTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGgtgagttttc ... gtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATC
ttgtgtgatgaatagatgtagacgtcttatggcgcttcttgtttggtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG
tatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcgttgggattgttttagtgtgattgtgttggtggagcaatttgtatgttagtttgtcgtggcttgtgtgatgaatagatgtagacgtcttatggcgcttcttgtttggtatttgtagGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG