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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggataaaactgtgaaacacggcatcttgttgatctatgcttcataagtgagattgccattgctttttccacatatgcactgttattttgttaatcagcaccttgttgaacattgactttagGGAGTGGAGACAGGCAGGAGGCAATCAGCCTGTTGTGCTGAGTGTTGGGCAAGCTATTCATGATTCAATTCCAAGTCCCACTATCTCTGCATCTCGTAAG

Basic information

species Glycine max
transcript GLYMA08G15880.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399844|gb|EV269715.1|EV269715
EST:     AGAGAACTTCTAGGTCATGTTAATGCAGATGATGTCATACAAAATATAAG                         GGAGTGGAGACAGGCAGGAGGCAATCAGCCTGTTGTGCTGAGTGTTGGGCA
genomic: AGAGAACTTCTAGGTCATGTTAATGCAGATGATGTCATACAAAATATAAGgttggataaa ... ttgactttagGGAGTGGAGACAGGCAGGAGGCAATCAGCCTGTTGTGCTGAGTGTTGGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacatatgcactgttattttgttaatcagcaccttgttgaacattgactttagGGAGTGGAGACAGGCAGGAGGCAATCAGCCTGTTGTGCTGAGTGTTGGGCAAGCTATTCATGATTCAATTCCAAGTCCCACTATCTCTGCATCTCGTAAG
                                           cattgac  putative branch site (score: 3)
             tgttattttgttaat  TA-rich tract