1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taacttatgtcagatcattccaattgtaattcctactgttttatttgggtgtcttgatctagatttttcttagatgatatcatacttctattttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTACTAGTAGGTCCCT
species | Glycine max |
transcript | GLYMA08G15250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGEST: gi|193535457|gb|FK488683.1|FK488683
genomic: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtacct ... ttttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTG
EST: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTATAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGEST: gi|207699686|gb|GD678943.1|GD678943
genomic: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtacct ... ttttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTG
EST: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTGEST: gi|208338504|gb|GE137776.1|GE137776
genomic: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtacct ... ttttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTG
EST: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTAT TATGTGCATTTTCTTCAGAGGAAGTACTCTCTTGGATCGTTTAACTTGTTG
genomic: GTTTTATAGCTGCTGCAGTGGCAGTTTGGAGCACCTCACTACAGCAGTATgtaagtacct ... ttttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTG
tgggtgtcttgatctagatttttcttagatgatatcatacttctattttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTACTAGTAGGTCCCT
tcttgat putative branch site (score: 4)
cttctatttt putative PPT
atttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttatgtcagatcattccaattgtaattcctactgttttatttgggtgtcttgatctagatttttcttagatgatatcatacttctattttgtgcagTATGTGCATTTTCTTCAGAGGAAGTATTCTCTTGGATCGTTTAACTTGTTGGGCCACACTGCACCAGTACAGGCAGCAAGTTTACTACTAGTAGGTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - -cattcca
- - - - - - - - - - - - - - - -cctactg
- - - - - - - - - - - - - - - - - - - - - - ttgggtg