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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatactgattaatgttgacaaggtggttcttaaatttactttagtacccgaaaaggactgaagcttttgaatctttatatgttcttacttacagATCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGAAACATTCTACCAAAAGCATACAGTTAAACCTA

Basic information

species Glycine max
transcript GLYMA08G14190.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14190.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ15695 (Selaginella moellendorffii), 3'ss of exon 2
gttaatactgattaatgttgacaaggtggttcttaaatttactttagtacccgaaaaggactgaagcttttgaatctttatatgttcttacttacagATCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGAAACATTCTACCAAAAGCATACAGTTAAACCTA
                            || | |   || |||    |  | |    ||| ||  | |    ||  || ||   ||  |  |  ||| | ||||||   ||||| ||| |||||| || ||||||| | |||||||| |||||||||||||| |   | ||||| |  | | |  | |  |    | 
----------------------------gtacatggtttgactccttttgctgcggcggaatggtggt----aactttaatgc-tttctggtgccagGTGAAGTTTAGCGAGCTGACACTGGACAACTTTAGAATGCTTCAATGTTTGGAATGGGAGCCTAGCGGGTCTTTCTATCGCATGAAGTCCGCGACGGATT

upper sequence: GLYMA08G14190.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ38222 (Selaginella moellendorffii), 3'ss of exon 2
gttaatactgattaatgttgacaaggtggttcttaaatttactttagtacccgaaaaggactgaagcttttgaatctttatatgttcttacttacagATCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGAAACATTCTACCAAAAGCATACAGTTAAACCTA
                            || | |   || |||    |  | |    ||  ||  | |    ||  || ||   ||  |  |  ||| | |||||    ||||| ||| |||||| || ||||||| | |||||||| |||||||||||||| |   | ||||| |  | | |  | |  |    | 
----------------------------gtacgtggtttgactccttttgctgcggcgggatggtggt----aactttaatgc-tttctggtgccagGTGAAGTTCAGCGAGCTGACACTGGACAACTTTAGAATGCTTCAATGTTTGGAATGGGAGCCTAGCGGGTCTTTCTATCGCATGAAGTCCGCGACGGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtacccgaaaaggactgaagcttttgaatctttatatgttcttacttacagATCAAGTTTGCTGAGCTTACATTGGACATCTATAGAATGATACAATGTTTAGAATGGGAGCCTAGTGAAACATTCTACCAAAAGCATACAGTTAAACCTA
                                          ttcttac  putative branch site (score: 2)
                                          ttcttactt  CT-rich tract
                         ttttgaatctttatat  TA-rich tract