1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tacaaagttttatttctagccatgtcctcaggattgatatttcttggaccgcattttgtttctttgcacaagggtttatgatttatgtcctatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
species | Glycine max |
transcript | GLYMA08G13560.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGEST: gi|151399243|gb|EV269114.1|EV269114
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGEST: gi|209709054|gb|BW658770.1|BW658770
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGEST: gi|207757097|gb|GD730055.1|GD730055
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
ggaccgcattttgtttctttgcacaagggtttatgatttatgtcctatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
tttatgatttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaagttttatttctagccatgtcctcaggattgatatttcttggaccgcattttgtttctttgcacaagggtttatgatttatgtcctatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC