Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccaatcacatcaatatctccccctataaatagtttatttcaatttttttttaaaaaaacttttcatatgtttaatttttggtttttgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATGTCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA

Basic information

species Glycine max
transcript GLYMA08G13470.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13470.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G57620.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattccaatcacatcaatatctccccctataaatagtttatttcaatttttttttaaaaaaacttttcatatgtttaatttttggtttttg-ggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATGTCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA
                 || |  |      |    ||  |||||| ||  |  |   || |||    | || ||  | | | | | |||||     || ||| ||||| |||||||||||||||||||||||||||||    ||||| |||||||  || || |||||  |||  || |||||||  || |||||||| || 
---------------gtaaaagattaataaactgctacattatttgaaaatactgaaaagaaa----tacaaatactcattctcttgttttcacaattgcagAGAAGCAGAGATGAGGATTGTGAGTGAAAAAACAAACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTTTACAG

upper sequence: GLYMA08G13470.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0034g01440.t01 (Vitis vinifera), 3'ss of exon 3
---------gtaattccaatcacatcaatatctccc-cctataaatagtttatttcaatttttttttaaaaaa-acttttcatatgtttaatttttggtttttgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATGTCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA
          |  ||  | |   | ||  ||||      | |  || | | ||  |||||   |  ||  |   ||  ||  | |      |||||||  |||   |  ||| ||||| || |||||||| ||||| |||||||||||||  |||||||||||||  ||||| ||||| ||||   | |||||||||||||| | |||||| 
gtaatttttatggttttagttggaacagcatctaatgtttttgcattgctaat--caattagatcataccagttaccatttttctcccatttttttggacttttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGGTACAGCATCATGTCATTGGGCGTCTGCATTGCAGTTTCAGCTTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394340|gb|EV264211.1|EV264211
EST:     AGGGAGCAGTA-GAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|208099775|gb|GD900326.1|GD900326
EST:     AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTG-AAAAACAAATGGCAGAGTGGCATG
genomic: AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|207683875|gb|GD666634.1|GD666634
EST:     AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|193688522|gb|FK634457.1|FK634457
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|151394089|gb|EV263960.1|EV263960
EST:     AGGGAGCAGTA-GAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|193628652|gb|FK574548.1|FK574548
EST:     CATCCATGAGAATTTGCTCTATCTTAGGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: CATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|209708754|gb|BW683778.1|BW683778
EST:     AGGGAGCAGTA-GAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|193686122|gb|FK625473.1|FK625473
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|208050941|gb|GD848964.1|GD848964
EST:     ATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: ATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|207689114|gb|GD673467.1|GD673467
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|298170194|gb|HO018818.1|HO018818
EST:     AGGGAGCAGTA-GAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGA
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGA
EST: gi|208328123|gb|GE124661.1|GE124661
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|209708781|gb|BW683779.1|BW683779
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|208251434|gb|GE050585.1|GE050585
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|298164598|gb|HO014243.1|HO014243
EST:     AGGGAGCAGTA-GAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAG
EST: gi|31474639|gb|CD416667.1|CD416667
EST:     AGGGAGCAGTA-GAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|192306630|gb|FG998056.1|FG998056
EST:     AGGGAGCAGT-AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGGGAGCAGTAAGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|207847367|gb|GD820408.1|GD820408
EST:     AGAGGCCATCCTATGAGTAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTG-AAAAAC-AATGGCAGAGTGGCATG
genomic: AGAGGCCATCC-ATGAG-AATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|208059371|gb|GD856939.1|GD856939
EST:     AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAG                         GGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: AGAGGCCATCCATGAGAATTTGCTCTATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
EST: gi|208328580|gb|GE132160.1|GE132160
EST:     TATCTTAAGGGCAG                         GGAAGCTGGGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG
genomic: TATCTTAAGGGCAGgtaattccaa ... tgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttttttttaaaaaaacttttcatatgtttaatttttggtttttgggtttcagGGAAGCTGAGATGAGGATTGTGAGTGAAAAAACAAATGGCAGAGTGGCATGGTTTAGCATTATGTCCTTGGCTATGTGCATTGCAGTTTCTGGTTTGCAA
                            gtttaat  putative branch site (score: 4)
                                         ttttt  putative PPT
     ttttttaaaaaaactt  TA-rich tract