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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagattagcttttgtttcctttttcctttactttgactagtcttgatagcatgtgttcaggaattagaagcacctgtaagttttgtttattgacttatgatttgattaaatcctcataaacaatccccatggtagacagGAACAAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCA

Basic information

species Glycine max
transcript GLYMA08G12810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12810.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0003g02590.t01 (Vitis vinifera), 3'ss of exon 3
------------------------gtgaagattagctt--ttgtttcctttttcctttactttgactagtcttgatagcatgtgttcagga---attagaagcacctg--taagttttgtttattgacttatgatttgattaaatcctcataaacaatccccatggtagacagGAACAAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCA
                           || ||    ||  | |   | |  |||   || ||||        ||  |  |  | || |  |    ||  ||  |  ||    |||||    || | |||||  |||||  |  || ||     ||||||   |||||   ||||||||||  | |||||||||||||| | |||||| || || |||| || ||| |||||  |||||| |||||||||  ||||||||||||  |  || ||
gtgaaaaagtaattcatactttctccaaatatgtatttcatggcaacatacttctcataatttggaggactgtgcaattagctcttaaaaatctgttccaaataaatgatctagtttacaatagtaacttaccatttgcgtttattctt---tacaatctgtatggttatcagGAACAAAGTTGTCTGAGGATTGCTGCAGATATGGTGCTGAAAACATCAATGATAACATTCTAGCTAGGGCTGCATCTATATATGGTGATGGTCTTAAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601388|gb|DB956694.1|DB956694
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACAAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaagatta ... tggtagacagGAACAAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattgacttatgatttgattaaatcctcataaacaatccccatggtagacagGAACAAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCA
                                       tccccat  CT-rich tract
          ttatgatttgattaaa  TA-rich tract