1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgaggatttagtaagttgtacagatttttcaatttgaacttgtctaagaatgtactgattattatgataagaggtgtgctgattattttcaaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAGCCACGTTTTACTAGATGGATAG
species | Glycine max |
transcript | GLYMA08G12570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGG TGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAEST: gi|254319449|gb|GR830700.1|GR830700
genomic: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGgtatgcacac ... caaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGA
EST: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGG TGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAEST: gi|298196794|gb|HO041537.1|HO041537
genomic: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGgtatgcacac ... caaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGA
EST: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGG TGCATATCGTGCATTTTACATCCTGAACTGGATEST: gi|151404363|gb|EV274173.1|EV274173
genomic: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGgtatgcacac ... caaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGAT
EST: AGAAGTGGAAATGTGGACAATTTGACTGTGCGATATGTATTCTTTCTTGG TGCAGATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAEST: gi|254319450|gb|GR830701.1|GR830701
genomic: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGgtatgcacac ... caaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGA
EST: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGG TGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGA
genomic: AGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGgtatgcacac ... caaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGA
taagaatgtactgattattatgataagaggtgtgctgattattttcaaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAGCCACGTTTTACTAGATGGATAG
ttattttc CT-rich tract
tgattattttcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaggatttagtaagttgtacagatttttcaatttgaacttgtctaagaatgtactgattattatgataagaggtgtgctgattattttcaaaatgcagTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAGCCACGTTTTACTAGATGGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctg