1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagccaatatttatattcatagctgttaccatctccctatattttgacacatgctgataatttttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAGGACAAAAGATATAAAAATCGTGAGCTACAGTTAATGCGCTTGATGGACC
species | Glycine max |
transcript | GLYMA08G12370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG GCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAGEST: gi|15287293|gb|BI471184.1|BI471184
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
EST: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG GCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAGEST: gi|207735962|gb|GD709825.1|GD709825
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
EST: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG GCTAAATGCTTAGGAAAACTGGACGAGCCAGTGGCEST: gi|209727967|gb|BW666687.1|BW666687
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTT-GGAAA-CTGG-CGAGCCAGTGGC
EST: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG GCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
atagctgttaccatctccctatattttgacacatgctgataatttttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAGGACAAAAGATATAAAAATCGTGAGCTACAGTTAATGCGCTTGATGGACC
tgctgat putative branch site (score: 3)
tttttcatctt putative PPT
ataatttttcatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccaatatttatattcatagctgttaccatctccctatattttgacacatgctgataatttttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAGGACAAAAGATATAAAAATCGTGAGCTACAGTTAATGCGCTTGATGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA