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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttagatgaagtcatcactgatatggatttggctgtttcatcaccgaagtatttttccacctgttcatatttatctgaacaattcataaatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT

Basic information

species Glycine max
transcript GLYMA08G12220.5
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 3
catttagatgaagtcatcactgatatggatttggctgtttcatcaccgaagtatttttccacctgttcatatttatctgaacaattcataaa-----tattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT
     |  | |  || |  |  ||  |||| | | | |||  |  |     |  | ||||        | |||| ||| |  | |||||  |     | |||||| ||||||| ||||||||||||   || ||| | ||||| ||||||||||| |||||  ||||||| || || |||||||| |||||||| ||| |||| |
----aaattcatttcttttcaaatcaggatattgattttttttttcttttttggtattcctaaatactaaatttgtct-attacttcatgcaatttgttttgcagACGGCTTCTACTACTGCAGAGAGCGATTTATCCCCCACTCATCCCATCCGATTGGGTTTGGCTTTAAATTTTTCTGTCTTCTATTATGAGATTATGAATT

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 3
catttagatgaagtcatcactgatatggatttggctgtttcatcaccgaagtatttt--tccacctgttc---atatttatctgaacaattcataaatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT
   ||  |  | |  ||  || | || | | |    ||| ||  |      |  |    |  |  | ||    ||||| |||        | ||     |||||| | ||||| || || ||||||||||| ||| | |||||||||||||| ||  ||||  |||| |||||||||||||| ||||| ||||||||| ||||||
---ttgtactatgaaat-gctaa-atagctctccgagttccagaattagttttgtcaagttgagttatttgaaatattcatccatttgtgtgattgggtttgcagACAGCTTCTACGACAGCAGAGGCTGATTTATCTCCCACACATCCCATTCGACTGGGTTTGGCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACT

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 3
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------------------------------------------catttagatgaagtcatcactgatatggatttggc--tgtttcatcaccgaagtatttttccacctgttcatatttatctgaa-caattcataaatat-tgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT
                                                                                         | ||| |   ||       | |   |     |   |||   || |     |     |  ||   ||    |  |  | ||    ||    | |  | ||||| | || || | ||| |||| | | || ||  | || || ||||| || ||  |||| ||||| ||||||||||||||||| |||||||| ||||||||||
gtgtgtctacgtgggggtgattgggtgttgtgctgagtaatatagtgagcttgggtggttggcactgcagcttgtggtgataactgttgtctagtttctgtatctggcggtggtggcgcagtgttgtccaattaagtgggctgcgtggcatgagtagtaacgtgacggaggtgatgtgaatacgtgtgcagGCTGCATCTAATACAGCAGTGACAGACTTGGCGCCAACTCATCCGATTCGGCTGGGACTGGCCTTGAACTTCTCTGTCTTCTATTATGAGATTTTGAACT

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 3
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------------------------------------------catttagatgaagtcatcactgatatggatt--tggctgtttcatcaccgaagtatttttccacctgttcatatttatctgaacaattcataaatat---tgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT
                                                                                         |    ||    | || |   |  || ||     ||| |  ||| ||      |  | | |   |||| | ||      | |||      ||    |    ||||| | || ||||  ||||||| | | ||  |  |||| || ||||| |||||  ||||  | |||||||||||||| |||||||||||||||||||||||||
gtatgttcaaagatgagtctcagattgcgctgataatacaaccttcagtggtcatttctggaaatgctgtgataattttcatagagtaactgacagtgacaatcgtgtttactacggcccagtgggtcattcgtcttgagtggttgtcttggcctggtaatgacatacagaaagtcgtatgtgcacgtgtgcagGCTGCATCCAGCACTGCAGTGACGGACCTGGCACCGACGCATCCTATCCGACTGGGATTAGCTTTGAACTTCTCGGTCTTTTATTATGAAATTTTGAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208068110|gb|GD861872.1|GD861872
EST:     GAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: GAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|193313226|gb|FK279181.1|FK279181
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|298163055|gb|HO011788.1|HO011788
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAG
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAG
EST: gi|10846741|gb|BF069606.1|BF069606
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|23058349|gb|BU578308.1|BU578308
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGA
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGA
EST: gi|208255162|gb|GE050813.1|GE050813
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|298194812|gb|HO043284.1|HO043284
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGA
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGA
EST: gi|209698244|gb|BW667547.1|BW667547
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|207712934|gb|GD692886.1|GD692886
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|11273769|gb|BF324164.1|BF324164
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAATGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACC-CCCA
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCA
EST: gi|193514293|gb|FK470609.1|FK470609
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|298195876|gb|HO044267.1|HO044267
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGC
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGC
EST: gi|298177315|gb|HO027096.1|HO027096
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGC
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGC
EST: gi|298165318|gb|HO011367.1|HO011367
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTTCTCTACTGCAG
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAG
EST: gi|21677259|gb|BQ629610.1|BQ629610
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|207796679|gb|GD768405.1|GD768405
EST:     GAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: GAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|208186969|gb|GD985069.1|GD985069
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|193475923|gb|FK441234.1|FK441234
EST:     CTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|207720046|gb|GD702545.1|GD702545
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|207730991|gb|GD706506.1|GD706506
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|193312196|gb|FK275672.1|FK275672
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCA
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCA
EST: gi|15201076|gb|BI424680.1|BI424680
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|37994791|gb|CF806380.1|CF806380
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|10237538|gb|BE806426.1|BE806426
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|193673030|gb|FK620348.1|FK620348
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|207797068|gb|GD770348.1|GD770348
EST:     GAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: GAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|151393532|gb|EV263407.1|EV263407
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|31560979|gb|CD486817.1|CD486817
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCAACCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|208228251|gb|GE021599.1|GE021599
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|208079854|gb|GD874110.1|GD874110
EST:     GTGATGAGTAGTAAAAGTAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: GTGATGAG-AG-AAAAG-AGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|298174010|gb|HO017346.1|HO017346
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAG
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAG
EST: gi|192305213|gb|FG993965.1|FG993965
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCGTTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|192297914|gb|FG988370.1|FG988370
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|192307132|gb|FK002294.1|FK002294
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAT                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|207806808|gb|GD778389.1|GD778389
EST:     ATGAGAGAAAAGAGGCTTGTCTTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: ATGAGAGAAAAGAGGC-TG-C-TGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
EST: gi|208117202|gb|GD916338.1|GD916338
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG                         TCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAGgtctgcttgt ... aatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgaagtatttttccacctgttcatatttatctgaacaattcataaatattgcagTCGGCTTCCACTACTGCAGAGGCTGAGTTACCACCCACACATCCCATCCGTTTGGGCCTGGCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACT
                       atatttatctgaacaa  TA-rich tract