1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtccaagtggaattttttcggaattattgattgttaatgcatgttctattctctttgctttatctatttggctctctgaatgtttctgtggctagctagTCAGAAATCACAAGGAAGATGTACAACTCGGCAAATTGTGATACTGATGATGCCAGCTGTGCGAGGGCGTTGCTCTCTAGATCAGAAATCACTCATGGGG
species | Glycine max |
transcript | GLYMA08G11760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAATCCT TCAGAAATCACAAGGAAGATGTACAACTCGGCAAATTGTGATACTGATGATEST: gi|8286250|gb|BE023809.1|BE023809
genomic: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAATCCTgtaagttagt ... ggctagctagTCAGAAATCACAAGGAAGATGTACAACTCGGCAAATTGTGATACTGATGAT
EST: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAATCCTCTEST: gi|8286250|gb|BE023809.1|BE023809
genomic: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAAT-C-CTgtaagttagt ... ggctagcta
EST: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAATCCTCTEST: gi|8286250|gb|BE023809.1|BE023809
genomic: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAAT-C-CTgtaagttagt ... ggctagcta
EST: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAATCCTCT
genomic: AGAAGCGGTTTCAGTACAAACAATTCAAAGAGGAGATTTTCATGAAT-C-CTgtaagttagt ... ggctagcta
tctattctctttgctttatctatttggctctctgaatgtttctgtggctagctagTCAGAAATCACAAGGAAGATGTACAACTCGGCAAATTGTGATACTGATGATGCCAGCTGTGCGAGGGCGTTGCTCTCTAGATCAGAAATCACTCATGGGG
tttatctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtccaagtggaattttttcggaattattgattgttaatgcatgttctattctctttgctttatctatttggctctctgaatgtttctgtggctagctagTCAGAAATCACAAGGAAGATGTACAACTCGGCAAATTGTGATACTGATGATGCCAGCTGTGCGAGGGCGTTGCTCTCTAGATCAGAAATCACTCATGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -ccaagtg
- - - - - - - - - - - - - - - - - - aatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttctg