1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagcatattcaacaaaagttctacgaaactaatgaagtagttaccatttcagtggattattttctagttactagtttgtatcttggcacacatttgttagGTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACCAACCACAGCATAAGACTATGATTAGCTCATCATGGGGTGCTCCTGCTGCT
species | Glycine max |
transcript | GLYMA08G11400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGGAAGTGGATTTCTTCTCCTTGATCATGAATTTAATTTGAAAGGAAG GTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACCAEST: gi|213595227|gb|DB962366.1|DB962366
genomic: GCAGGAAGTGGATTTCTTCTCCTTGATCATGAATTTAATTTGAAAGGAAGgtaccctttt ... catttgttagGTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACCA
EST: GCAGGAAGTGGATTTCTTCTCCTTGATCATGAATTTAATTTGAAAGGAAG GTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACEST: gi|213591586|gb|DB955794.1|DB955794
genomic: GCAGGAAGTGGATTTCTTCTCCTTGATCATGAATTTAATTTGAAAGGAAGgtaccctttt ... catttgttagGTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTAC
EST: GCAGGAAGTGGATTTCTTCTCCTTGATCATGAATTTAATTTGAAAGGAAG GTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTAC-A
genomic: GCAGGAAGTGGATTTCTTCTCCTTGATCATGAATTTAATTTGAAAGGAAGgtaccctttt ... catttgttagGTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACCA
atttcagtggattattttctagttactagtttgtatcttggcacacatttgttagGTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACCAACCACAGCATAAGACTATGATTAGCTCATCATGGGGTGCTCCTGCTGCT
attattttctagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcatattcaacaaaagttctacgaaactaatgaagtagttaccatttcagtggattattttctagttactagtttgtatcttggcacacatttgttagGTGGGAGAAACCTGGGCACAGTCCATCATTTGGGTATGACTTCTGGTACCAACCACAGCATAAGACTATGATTAGCTCATCATGGGGTGCTCCTGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - aacaaaa
- - - - - - - - - - - - - - - aatgaag
- - - - - - - - - - - - - - - - - - - - - -ccatttc