Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctgtttcattgatgctggaacaatactatggggtttattttattgagttataccattttcctagacttaagacattgctttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA

Basic information

species Glycine max
transcript GLYMA08G10910.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10910.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g41810.1 (Oryza sativa), 3'ss of exon 3
tgctgtttcattgatgctggaacaatactatggggttta--ttttattgagttataccattttcctagacttaagacattgctttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA
   |    |  ||||||     | ||  | ||    ||   | || ||    | |  | | || ||  |  | |        |  |  |||      | |||||||||||||| || || || ||  |  | ||| |||| ||||||||||| ||  ||||| | || |||||| |||| ||||||||||||||||| ||||
--gtaagactctgatgcgtatgcgatggtttgtttcttggttcttgttatcctttttcctgtttctctagctgaatgtcaaatgctctaataattgctgcagAACACAAGGGAGACAGCGTTCGCTCTTCGCAAGCTGCCTTTGGTCAAGGCAAAGCGGTACCTTGAGGATGTTATTGCTCACAAGCAGGCAATTCCCTTCA

upper sequence: GLYMA08G10910.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 2
----tgctgtttcattgatgctggaacaatactatggggtttattttattgagttataccattttcctagacttaagacattgctttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA
    |    | |  || ||  | | |   | || |     | |   | |    ||||       ||  |   ||       |  ||| || ||||       ||||||||||||| |||||   ||| || ||||||||||| |||| |||||| |||||||| ||||| |||||||| | ||||||||| || || || ||||
tggatatcatgttgttcatttttgtatccttctct----ctgaaaatctgagtttattgtgaactcacatcattgtatttctcatttctatattgtgtcaatagAACACAAGGGAGACTGCTCATGCCATTAGGAAGTTGCCTTTGGCCAAGGCCAAAAGGTATTTGGAGGATGTTCTGGTCCACAAGCAAGCCATACCTTTCA

upper sequence: GLYMA08G10910.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 3'ss of exon 4
-tgctgtttcattgatgctggaacaatactatggggtttattttattgagttataccattttcctagact-taagacattgc-tttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA
 |    | |  || ||  |  |   || ||   |  | |       |||||| ||   |   | || |   |   | ||  | |||  | | ||       ||||||||||||| |||||   ||| || ||||||||||| |||| |||||| |||||||| ||||| |||||||| | ||||||||| || || || ||||
ttatcatgttgttcatttttta--tatccttctgtatgtgagaatctgagtt-tatggtgaacttaaatcattgtatatctcatttccatactgtctcaatagAACACAAGGGAGACTGCTCATGCCATTAGGAAGTTGCCTTTGGCCAAGGCCAAAAGGTATTTGGAGGATGTTCTGGTCCACAAGCAAGCCATACCTTTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180950|gb|HO022389.1|HO022389
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTTATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|8827548|gb|BE211278.1|BE211278
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192311078|gb|FK004753.1|FK004753
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298163564|gb|HO012297.1|HO012297
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|151396569|gb|EV266446.1|EV266446
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|4293582|gb|AI442068.1|AI442068
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|208150482|gb|GD950877.1|GD950877
EST:     TTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: TTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298163269|gb|HO012002.1|HO012002
EST:     CTTGCAAGGATAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCCTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|209710236|gb|BW658932.1|BW658932
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192311077|gb|FK004752.1|FK004752
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298163590|gb|HO012323.1|HO012323
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298191555|gb|HO039034.1|HO039034
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|13789287|gb|BG651878.1|BG651878
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298187459|gb|HO034608.1|HO034608
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|7795640|gb|AW781037.1|AW781037
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|208235857|gb|GE033333.1|GE033333
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192334610|gb|FK025185.1|FK025185
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|13311603|gb|BG405254.1|BG405254
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|193573449|gb|FK530144.1|FK530144
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAACCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|19269677|gb|BM885933.1|BM885933
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|5606061|gb|AI900159.1|AI900159
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192330083|gb|FK020899.1|FK020899
EST:     TCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: TCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|23729429|gb|BU762800.1|BU762800
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|209710235|gb|BW658931.1|BW658931
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|8404300|gb|BE059934.1|BE059934
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|193653715|gb|FK598243.1|FK598243
EST:     CTTGCA-GGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATACAAGGAAAGTTGCCCTTGGTCA
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAAT-CA-GGAA-GTTGCCCTTGGTCA
EST: gi|9204377|gb|BE330601.1|BE330601
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|15201820|gb|BI425076.1|BI425076
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|24206126|gb|BU965379.1|BU965379
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|7234136|gb|AW569476.1|AW569476
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|13788094|gb|BG650686.1|BG650686
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|193628633|gb|FK577217.1|FK577217
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAACCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|10845617|gb|BF068696.1|BF068696
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCACGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192315677|gb|FK011145.1|FK011145
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|10843484|gb|BF066782.1|BF066782
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAAGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|18735395|gb|BM528740.1|BM528740
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|16106216|gb|BI893956.1|BI893956
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192330491|gb|FK021222.1|FK021222
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298168677|gb|HO009607.1|HO009607
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCCAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298191131|gb|HO038610.1|HO038610
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|4396527|gb|AI495524.1|AI495524
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|15662172|gb|BI699543.1|BI699543
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|21285671|gb|BQ473542.1|BQ473542
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|151402923|gb|EV272736.1|EV272736
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298165423|gb|HO011472.1|HO011472
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|18692893|gb|BM521741.1|BM521741
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|16347631|gb|BI973226.1|BI973226
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|21887359|gb|BQ740572.1|BQ740572
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298167044|gb|HO010483.1|HO010483
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|22541284|gb|BU091127.1|BU091127
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGG-AACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298170950|gb|HO015926.1|HO015926
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|14990642|gb|BI316315.1|BI316315
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|209715180|gb|BW665657.1|BW665657
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|193327221|gb|FK292444.1|FK292444
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192300035|gb|FG991853.1|FG991853
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298185504|gb|HO030717.1|HO030717
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192318825|gb|FK011439.1|FK011439
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAATTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|12688125|gb|BG154461.1|BG154461
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|209728753|gb|BW655433.1|BW655433
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|38192672|gb|CF921878.1|CF921878
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298169553|gb|HO020913.1|HO020913
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298165134|gb|HO011183.1|HO011183
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|58018390|gb|CX705132.1|CX705132
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|9204127|gb|BE330351.1|BE330351
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298169605|gb|HO020965.1|HO020965
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298166225|gb|HO009196.1|HO009196
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAATGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|7590615|gb|AW706363.1|AW706363
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298185551|gb|HO030764.1|HO030764
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|16347772|gb|BI973367.1|BI973367
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298176850|gb|HO026857.1|HO026857
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298175074|gb|HO018069.1|HO018069
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|213607231|gb|DB965117.1|DB965117
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|6566246|gb|AW233927.1|AW233927
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298170710|gb|HO015686.1|HO015686
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298186622|gb|HO037255.1|HO037255
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|298172232|gb|HO021824.1|HO021824
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCGAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|192330082|gb|FK020898.1|FK020898
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|207693823|gb|GD676350.1|GD676350
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
EST: gi|209728752|gb|BW655432.1|BW655432
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtgagtactg ... gcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttataccattttcctagacttaagacattgctttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA
                                   tttttaaattgcaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgctgtttcattgatgctggaacaatactatggggtttattttattgagttataccattttcctagacttaagacattgctttttaaattgcaatttcagAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG