1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttctgtttgcctatgattgctgtgccttacagctttgctcctttgttttagttggttttagtggattatattgaagttgaatgaatgaatattcccagGTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAG
species | Glycine max |
transcript | GLYMA08G10790.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGTATGATGCTACTGGTGTAAGATTGCAAGCAGGACGCCAAGCAGAG GTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAAEST: gi|6964295|gb|AW432988.1|AW432988
genomic: TGATGTATGATGCTACTGGTGTAAGATTGCAAGCAGGACGCCAAGCAGAGgtttgatacc ... atattcccagGTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAA
EST: TGATGTATGATGCTACTGGTGTAAGATTGCAAGCAGGACGCCAAGCAGAG GTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAA
genomic: TGATGTATGATGCTACTGGTGTAAGATTGCAAGCAGGACGCCAAGCAGAGgtttgatacc ... atattcccagGTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAA
tgttttagttggttttagtggattatattgaagttgaatgaatgaatattcccagGTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAG
tattccc CT-rich tract
attatattgaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgtttgcctatgattgctgtgccttacagctttgctcctttgttttagttggttttagtggattatattgaagttgaatgaatgaatattcccagGTTTTAAACCAAATTGTGTATGAACTTCCTGCTGAGCATCCTCTGGCCGAAAGCAGACCACTTCGCGAACTTCTTGGGCACACCCCCCCTCAG
- - -tgtttgc
- - - - - - - - - - gctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga