1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgttgtaatgttttgtgatgattacataataatagtagaagtattcatttaatgaattaaaccttataacaatggtgtttttgcccctaatttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTTCACGGACCCAGGAGAACATACCTATGACTGGGAAGGCGTGCTTCCTCG
species | Glycine max |
transcript | GLYMA08G09910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAG AAATTGTGGAATTTTTCTTTGTGGACATGACTCCATTTGTCGAGGAGTACTEST: gi|254331558|gb|GR843515.1|GR843515
genomic: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGgtataattta ... atttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACT
EST: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAG AAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTEST: gi|254331757|gb|GR843607.1|GR843607
genomic: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGgtataattta ... atttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACT
EST: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAG AAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTEST: gi|8670224|gb|BE191331.1|BE191331
genomic: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGgtataattta ... atttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACT
EST: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAG AAATTGTGGAATTTTTCTTTGEST: gi|209697509|gb|BW670010.1|BW670010
genomic: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGgtataattta ... atttgtgtagAAATTGTGGAATTTTTCTTTG
EST: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAG AAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTEST: gi|213603082|gb|DB960401.1|DB960401
genomic: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGgtataattta ... atttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACT
EST: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAG AAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACT
genomic: ACAAAAAGATAGCAGATGGCTTTGCATGAGATCTTTTATTCTCGATGGAGgtataattta ... atttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACT
tcatttaatgaattaaaccttataacaatggtgtttttgcccctaatttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTTCACGGACCCAGGAGAACATACCTATGACTGGGAAGGCGTGCTTCCTCG
aattaaaccttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttgtaatgttttgtgatgattacataataatagtagaagtattcatttaatgaattaaaccttataacaatggtgtttttgcccctaatttgtgtagAAATTGTGGAATTTTTCTTTGTGGACACGACTCCATTTGTCGAGGAGTACTTCACGGACCCAGGAGAACATACCTATGACTGGGAAGGCGTGCTTCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA