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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgcaggtgaaaagcaacctcttttgttttttcttcttcttaatttcaatttatataaggcttaaaatattaaatccaagtaacatgaagtcaagTGCCTTTTTACATTCTTTGTTTCAGAAGTTGCAGAGTTTTTCTTTGTAGATACTACTCCGTTTGTGGACAAATACTTCATAGAACCTAAGGACCATGTTT

Basic information

species Glycine max
transcript GLYMA08G09880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09880.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatgcaggtgaaaagcaacctcttttgttttttcttcttcttaatttcaatttatataaggcttaaaatattaaatccaagtaacatgaagtcaagTGCCTTTTTACATTCTTTGTTT-CAGAAGTTGCAGAGTTTTTCTTTGTAGATACTACTCCGTTTGTGGACAAATACTTCATAGAACCTAAGGACCATGTTT-------------------------
||||| ||    ||||      ||| |||  |  ||  | |    ||   || ||| |       ||    |||||      | ||| ||              ||| || |||||  |   ||||| ||| ||||||||||||||||||||| || || ||||||||||||||||||| ||| ||| |||| ||||  |                         
gtaaaggctaacgaaag----tctcctttcgtgctttctgtggcaaaacccactttcttg-----ttggggtatta----ttattaatat-------------ctttcactttcttgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACTTCACAGATCCTGAGGATCATGACTATGACTGGAAGGGCGTCCTTCCCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttcaatttatataaggcttaaaatattaaatccaagtaacatgaagtcaagTGCCTTTTTACATTCTTTGTTTCAGAAGTTGCAGAGTTTTTCTTTGTAGATACTACTCCGTTTGTGGACAAATACTTCATAGAACCTAAGGACCATGTTT
                                     aagtaac  putative branch site (score: 2)
     tcaatttatataaggc  TA-rich tract