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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaattaatgtaccactaattacctctctattcactaattcaactatcttcactgttcacttagcttttcattgtcatgtactaatttgctttacttgtcatattatatatagATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAG

Basic information

species Glycine max
transcript GLYMA08G09660.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09660.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S68_116V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagtaaattaatgtaccactaattacctctctattcactaattcaactatcttcactgttcacttagcttttca--ttgtcatgtactaatttgctttacttgtcatattatatatagATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAG
    |||||   | |  || ||     ||     ||| | |  | |||  |   |   || |     | || | ||  |    | | |||||  |   |    | | | | |  | | || | | |    |||||||| || ||||| |||||||| ||||| || ||||| ||||||||||| ||  | |  ||||| ||  |||||||| | ||||||
----gtaaa---aagctcctcttgaacccctaagatttatt--tccaatgacgatgcatgatatgcgacctctacaggtcacaaagcactaagatcgatggtgtttgacaatgga-acagGTTGCACGTTCCTATTCACGTCGATGCCGCAAGTGGAGGCTTCATAGCTCCTTTCCTTTATCCCGACATTGTGTGGGACTTCCGACTCCCACTTGTGAAG

upper sequence: GLYMA08G09660.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ18071 (Selaginella moellendorffii), 3'ss of exon 4
gtaagtaaattaatgtaccactaattacctctctattcactaattcaactatcttcactgttcacttagcttttcattgtcatgtactaatttgcttta--cttgtcatattata--tatagATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAG
                                                             | |  || || |   |  || |     ||   |||| |  ||| || | || |     |||||||||||| ||||| || || |||||||| ||||| || || || ||||||||||| |||||||| || || ||||||||| || | ||  | || |||
------------------------------------------------------------gtaaaatatctctctgtgttcgt-cgagaaaaagcttgaaacttatcgttttcttgccttagATGGGATACTCCTATCCACGTTGATGCTGCCAGTGGAGGATTCATCGCTCCATTCCTCTATCCAGATTTGGAGTGGGATTTTCGATTGCCTCTTGTCAAG

upper sequence: GLYMA08G09660.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ36644 (Selaginella moellendorffii), 3'ss of exon 4
gtaagtaaattaatgtaccactaattacctctctattcactaattcaactatcttcactgttcacttagcttttcattgtcatgtactaatttgctttacttgtcatattatatatagATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAG
                                                      | |  | || ||| | | ||| | |      |        |||| ||| |  | ||     ||||||| |||| ||||| || || ||||| || ||||| || || || ||||||||||| |||||||| || || ||||||||| || | ||  | || |||
-----------------------------------------------------gtaaaagatctctttg-tgttcgtcgaggaaaagcttgaaacttttcttttttt-ttggccttagATGGAATACTCCTATCCACGTTGATGCCGCCAGTGGAGGATTCATCGCTCCATTCCTCTATCCAGATTTGGAGTGGGATTTTCGATTGCCTCTTGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttagcttttcattgtcatgtactaatttgctttacttgtcatattatatatagATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAG
                     tactaat  putative branch site (score: 1)
                                tttacttgtcatatta  TA-rich tract