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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattgtaaactcttacaaatttcttggacatgcaaagactcttctttcttttccatgcttgagtataaagttcaattttaaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATTACAGAACTTGTCAATGATACCCTTGCTAGTGAAGGATCAAATAGCTTTT

Basic information

species Glycine max
transcript GLYMA08G09180.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323419|gb|FK015305.1|FK015305
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|193665926|gb|FK611313.1|FK611313
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|21677711|gb|BQ630062.1|BQ630062
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|192311655|gb|FK004874.1|FK004874
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|298190692|gb|HO032813.1|HO032813
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|209712035|gb|BW674180.1|BW674180
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|192311684|gb|FK004875.1|FK004875
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|24205274|gb|BU964527.1|BU964527
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|7587871|gb|AW703678.1|AW703678
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|37996739|gb|CF808328.1|CF808328
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|298163506|gb|HO012239.1|HO012239
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|16996758|gb|BM086130.1|BM086130
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|208159325|gb|GD955242.1|GD955242
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|8285675|gb|BE023234.1|BE023234
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
EST: gi|6566797|gb|AW234429.1|AW234429
EST:     TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagactcttctttcttttccatgcttgagtataaagttcaattttaaaactttagGATTCAGGTGATCTTCGTAAGGAGAGTGGTCAGGATACGCTGAAGCGCATTACAGAACTTGTCAATGATACCCTTGCTAGTGAAGGATCAAATAGCTTTT
                           agtataaagttcaatt  TA-rich tract