1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caagcaaaactaccaccgttaagaggtaacatttaaaagcagtttcagtaaacaattctcaaaaagttgttctgaaacatctgtttatacttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGCGGTCAAGCTCGTGGACTTACATGGTTCATTCCTAACGATGACCCAACT
species | Glycine max |
transcript | GLYMA08G09160.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGG AACTTTTACTCCTGGTCATGATGCTGTGCNAAAGGTAACACTAGTTCCTC-EST: gi|151398623|gb|EV268494.1|EV268494
genomic: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaagaaatt ... ttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCG
EST: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGG AACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGEST: gi|58020465|gb|CX707207.1|CX707207
genomic: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaagaaatt ... ttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCG
EST: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGG AACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGEST: gi|14206236|gb|BG839914.1|BG839914
genomic: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaagaaatt ... ttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCG
EST: AGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGTCATGCTATTTGTGG AACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGGAACACTTAGTTCCTCEST: gi|192319073|gb|FK006885.1|FK006885
genomic: AGAGCAAAAGTTTAGTGGCATATCATGAAGTTGG-TCATGCTATTTGTGGgtaagaaatt ... ttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACT-AGTTCCTC
EST: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGG AACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGEST: gi|26043767|gb|CA782158.1|CA782158
genomic: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaagaaatt ... ttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCG
EST: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGG AACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCG
genomic: AAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaagaaatt ... ttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCG
cagtaaacaattctcaaaaagttgttctgaaacatctgtttatacttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGCGGTCAAGCTCGTGGACTTACATGGTTCATTCCTAACGATGACCCAACT
cttgctt CT-rich tract
tttatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagcaaaactaccaccgttaagaggtaacatttaaaagcagtttcagtaaacaattctcaaaaagttgttctgaaacatctgtttatacttgcttgcagAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGCGGTCAAGCTCGTGGACTTACATGGTTCATTCCTAACGATGACCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
caagcaa
- - - - -ctaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctgt