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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttttccaccttttcttttttcccgttgacaattcaacttatatctaccttatttgtttctgctcatgttctgacctattatcatatcgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG

Basic information

species Glycine max
transcript GLYMA08G07670.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07670.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0028g00460.t01 (Vitis vinifera), 3'ss of exon 3
--ttttttttccaccttttcttttttcccgttgacaattcaacttatatctaccttatttgtttctgctcatgttctgacctattatcatatcgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG
  |  |   |  |     ||  |    | |||   | |    ||  ||   | |  |||| | | |  | ||| |    || |  ||  |||  || || ||||||| ||   ||||||  | ||  ||||||||||||| ||||| || || |||||||||||||||||||| |||||||| ||||||||||||
attactaaatttagggcatcagtggaactgttattattaactctattaatcatccaatttttatttagttatgctacctccaaaaat--tattctgctacagGCACTTGAAATGGTGCTTCTCGATCTTCCTGGTCTTCTATTTTTCTCAACATATACATTACTTGTCTTGTTTTGGGCTGAAATATATCACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163926925|gb|EH038506.1|EH038506
EST:     GGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: gi|192307419|gb|FK000761.1|FK000761
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GG-CTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaccttatttgtttctgctcatgttctgacctattatcatatcgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG
                          ttctgac  putative branch site (score: 2)
                                  tattatcatat  TA-rich tract