1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttttttccaccttttcttttttcccgttgacaattcaacttatatctaccttatttgtttctgctcatgttctgacctattatcatatcgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG
species | Glycine max |
transcript | GLYMA08G07670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACTEST: gi|11275013|gb|BF325337.1|BF325337
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACTEST: gi|163926925|gb|EH038506.1|EH038506
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACTEST: gi|213601479|gb|DB970409.1|DB970409
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACTEST: gi|298185371|gb|HO030584.1|HO030584
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCNNNNNNNN-CTACTEST: gi|298173449|gb|HO016785.1|HO016785
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
atctaccttatttgtttctgctcatgttctgacctattatcatatcgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG
ttctgac putative branch site (score: 2)
tattatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttttccaccttttcttttttcccgttgacaattcaacttatatctaccttatttgtttctgctcatgttctgacctattatcatatcgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG
- - - ttccacc
- - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc