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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatgttgtagtactgtttttaatgtgtgaacgtttttgtgaagtgtgttgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 3'ss of exon 3
gtataatgttgtagtactgtttttaatgtgtgaacgtttttgtgaagtgtgttgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG
             ||||| |||  ||| | | |||  |  ||   |   | |  |    ||| || | ||| |          | |    ||   |||||||| |||||||| || ||||||||||| || ||  | || || ||||| || || ||||||   ||||||||||| |||||||| |||||||| ||||
-------------gtact-tttgcaatatataaacaatagtgcataccctttacttac-tttgtgatcact-atgttaaccttgcttcaatggcctagTTGGACATCATGGACAGGGGCACTGATGCTCGTAACTTTTTACTGGGAAATGTGATCCCCCTCAAGCTTGGTTATGTAGGTGTTGTAAATCGTAGCCAAG

upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
gtataatgttgtagtactgtttttaatgtgtgaacgtttttg--tgaagtgtgttgtggtgtttctgt-ttactgacaagtgtgggggtgtgt---tgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG
          ||  || |  | |     |  |   | ||| |  | |  |||| ||      | || | || || || | ||      | | |   ||  | |||||||||| ||||| ||||| |||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||
----------gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG

upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 3
gtataatgttgtag--tactgtttttaatgtgtgaacgtttttgtgaagtgtgttgtggtgtttctgtttactgacaagtgtgggggtgt---------gttgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG
||   || |   |   |  | |||||    | |||| |  | ||  |  | ||    | | ||    ||| || |  ||  | ||    |         ||  | | ||||||| || ||||| ||||| || ||||| || ||| | ||||| |||||||| |||||||| |||||||||||  | ||||||||||||||||||||||
gtgctatatatcaacttgatttttttgtcttatgaatgcctgtgcaacatttgc-aagcttttatcattttctaatgaggtttggcaaataccccacttgtaatttcagTTGGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAG

upper sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S49_216V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------------------------------------------gtataatgttgtagtactg-tttttaatgtgtgaacgttt-----ttgtgaagtgtgttgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgt---tagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG
                                                                        | |  | ||| |  |  || ||||| |  | |||   |||     || | |    | | |  |||| |   | |   |     ||   || |   |||  |    |||||||||| ||||||||||| || |||||||||||| |  | |||||||| || |||||  | |||||||| ||| | || ||||| ||  | || ||||
gtaagctgacttttctattttcttttgtccctactatggcattggtgcttccttcccacattaagaagggttgaaataagttttgcttttgatttttgacttttgattttttcaatttttttatccttttcgaagtgtcttgatcttgagctctttgattggttaacttgaatgtgcagTTGGATATTATGGATAGAGGAACAGATGCGCGGAATTTTCTTCTAGGAAATGTCATTCCATTACGACTTGGCTATATTGGGGTTGTAAACAGGAGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtgtgttgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG
                        tactgac  putative branch site (score: 1)