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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatgaataacctatattattttcatggtgataatccacaccaaaatttctgataaacatgttgtataattactctgaagtaatgtttgtctcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAG

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 3
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 3
gtatgaataacctatattattttcatggtgataatccacaccaaaatttctgataaacatgttgta-taattactctgaagtaatgtttgtctcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAG
   |||  |   |  || |||   ||| | |||  |   ||         || | ||   || ||| | | |   || |  |  || || ||| ||  ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||
--gtgagcattgtgcataatt---atgttcataggctttacg--------tgttgaatgagtagtaatgactggcctta--tcctgattatct-ttggcagCTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATTTGCTTTTGGCATGGGACTAACTCAG

upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 3
---gtatgaataacctatattattttcatggtgataatccacaccaaaatttctgataaacatgttgtataattactctgaagtaatgtttgtctcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAG
   |  |    | | | |  |    | ||| || | |  |     | |  | | | | ||| || | |||| | | | || | ||||   | |  |||  ||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||| ||||||||| |||||||||||||||
tttgactacgaagcttgttattcacttatgatgttgagtcctttgaca--tgcagcttaac-tggtttatattcattttggactaatacattttccttggcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctgataaacatgttgtataattactctgaagtaatgtttgtctcttttcagCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAG
  ttctgat  putative branch site (score: 3)
                                      tgtttgtctcttttc  putative PPT
             atgttgtataatta  TA-rich tract