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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatggcatgcatatatatcatcaaattaaattaaatcaaaacttgtctttgatttcttttttactaactggtcaacaatttaatttgcagCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAA

Basic information

species Glycine max
transcript GLYMA08G06190.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06190.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 3
gtcaatggcatgcatatatatcatcaaattaaattaaatcaaaacttgtctttgatttcttttttactaactggtcaacaatttaatttgcagCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAA
||   | |      |     ||      ||  ||||  |  | | |  |    |||||     |    |  || |        |  | |||||||||||||||| ||||||||||||||||||||||| ||  | || ||||| || ||||| || || |||||| | ||||| || ||  |||| || ||||
gttgtttgtgatgtttctcgtctgtgttttggattatttggagattattaggcgattttggaatgttaatttgtttgtttggatgctatgcagCTTGATAGAGTTTCTAGCATTGCTGCCAAGTACATAGGGCGGCCGATTTCACAGCTCCCACCAGTACAGCCTGTCCATATTTCTTCATTGGATTTGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaacttgtctttgatttcttttttactaactggtcaacaatttaatttgcagCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAA
            tttgatttctttttta  TA-rich tract