1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcattattttaaactattttctgtaatccgtaacttgcaacaagatttttctcactgttctagatcctgattgcagagtgtgcttattgtttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCT
species | Glycine max |
transcript | GLYMA08G05930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|7233239|gb|AW568587.1|AW568587
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|192329412|gb|FK021838.1|FK021838
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|209697397|gb|BW675542.1|BW675542
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|254324939|gb|GR834364.1|GR834364
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|207811072|gb|GD782993.1|GD782993
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: CTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|151397725|gb|EV267598.1|EV267598
genomic: CTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGEST: gi|254324938|gb|GR834363.1|GR834363
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
atttttctcactgttctagatcctgattgcagagtgtgcttattgtttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCT
ttgttttt CT-rich tract
ttattgtttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattattttaaactattttctgtaatccgtaacttgcaacaagatttttctcactgttctagatcctgattgcagagtgtgcttattgtttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtgtg