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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaccattgtgtgaccatgttgaactgttacatttatcaattatgttctgacttttaagcttttgagtgggaaattgcaaatagccatctaggtttctccctaaacctgttgctgacttattttatctactatgaataagGATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAA

Basic information

species Glycine max
transcript GLYMA08G05700.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05700.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtgcaccattgtgtgaccatgttgaactgttacatttatcaattatgttctgacttttaagcttttgagtgggaaattgcaaatagccatctaggtttctccctaaacctgttgctgacttattttatctactatgaataagGATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAA
                                      |   ||| ||||   |     | | |    || ||| | |    |  || |  |   |    | ||   |  ||    | || ||| | | | | |      |||| |||||||||||| ||||||||||| ||||| |||||| | ||||| || ||||||||||||
-------------------------------------gtgagtcatttatcaccaagactgtgaaagcttaagttgcattagggtaacattctgtttaagtgctgg-tggactcact-cttactaactctgtttc-----aata-gGATTATGTTGCTACTCGGTGGTACCGTGCCCCTGAACTCTGTGGATCATTTTTCTCAAAA

upper sequence: GLYMA08G05700.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtgcaccattgtgtgaccatgttgaactgttacatttatcaattatgttctgacttttaagcttttgagtgggaaattgcaaat-agccatctaggtttctccctaaacctgttgctga-cttattttatctactatgaata----agGATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAA
                                          | | | ||   || |||   ||   | |||  |  ||| ||   || || | ||    |  ||   |  |  || |  ||| || ||||  | || |||| ||     |||||||||| || ||||||||||||||||| |||||| | ||||| || |||||||| |||
-----------------------------------------gtgagtcat---ctaact--caa---tgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgttta-tatggattttgtagGATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctaggtttctccctaaacctgttgctgacttattttatctactatgaataagGATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAA
                         tgctgac  putative branch site (score: 2)
                                ttattttatctactat  TA-rich tract