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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttggacttcatttaaatgccctttcagtttgtgtgtgtgtgttttttttctttatatatatatatagcgtgcgttttcaatgatgctgctgctgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG

Basic information

species Glycine max
transcript GLYMA08G05280.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05280.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 3'ss of exon 3
--------------gtaacttggacttcatttaaatgccctttcagtttgtgtg-tgtgtgttttttttctttatatatatatatagcgtgcgttttcaatgatgctgctgctgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG
                |  ||    || ||   ||    |||   | | ||||| ||||    |  ||| |||  ||  || |  |  |   |  ||  |  ||  |   | ||||   |||||| |||| |  |||||||| ||||| || |||||||| ||||| ||||| |||||||||||| | |||||||||||| | || || |||||||||
gtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcat-ttttggttgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTGAAGTGTGATTTGACTGAAAATCTCACTCTGAAGGCTAATGCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533094|gb|EH261227.1|EH261227
EST:     CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... tgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
EST: gi|120533228|gb|EH261361.1|EH261361
EST:     CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... tgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttatatatatatatagcgtgcgttttcaatgatgctgctgctgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG
                                            ctgctct  CT-rich tract
     tatatatatatata  TA-rich tract