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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaagttattgactatttgcagcaagttttgatgaaaaaaggaagaagtttggcatgttaatggaattctattttgttgatttcttcttgttttggcagTCCCTTGTCAGGGTGCTTGAATCTTCAGCTGGAAACACTCCCTGGTACTCTTTGATTTTATTTCAAGACCTGCTAGTGTCCACAACTCTATCTCCT

Basic information

species Glycine max
transcript GLYMA08G05260.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990523|gb|BI316196.1|BI316196
EST:     GCTGCAATTGAGGTTCAG                         TCCCTTGTCAGGGTGCTTGAATCTTCAGCTGGAAACACTCCCTGGTACTCT
genomic: GCTGCAATTGAGGTTCAGgtcagataag ... gttttggcagTCCCTTGTCAGGGTGCTTGAATCTTCAGCTGGAAACACTCCCTGGTACTCT
EST: gi|7925700|gb|AW831726.1|AW831726
EST:     AATTGAGGTTCAG                         TCCCTTGTCAGGGTGCTTGAATCTTCAGCTGGAAACACTCCCTGGTACTCT
genomic: AATTGAGGTTCAGgtcagataag ... gttttggcagTCCCTTGTCAGGGTGCTTGAATCTTCAGCTGGAAACACTCCCTGGTACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtttggcatgttaatggaattctattttgttgatttcttcttgttttggcagTCCCTTGTCAGGGTGCTTGAATCTTCAGCTGGAAACACTCCCTGGTACTCTTTGATTTTATTTCAAGACCTGCTAGTGTCCACAACTCTATCTCCT
                                    tttcttcttgtttt  CT-rich tract
                    aattctattttgtt  TA-rich tract