1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtatcaaatgctttcctttcgctttggctctgtcctacccgactgatgctcaagtagctgtctctcataccttaattatgaatttttctctttgagccagATTTTCTCGTGGGGAAAAAGTTCATTTTACCATCATTCCGTGATTGCTTAAAGGAACGTGGAACTGTGCAGATGCTGACGATAGGTCGTGAGGCTGCAAT
species | Glycine max |
transcript | GLYMA08G05260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGACTGACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGGGGG ATTTTCTCGTGGGGAAAAAGTTCATTTTACCATCATTCCGTGATTGCTTAAEST: gi|6454473|gb|AW185156.1|AW185156
genomic: AGGACTGACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGAGGGgtaagtcatc ... tttgagccagATTTTCTCGTGGGGAAAAAGTTCATTTTACCATCATTCCGTGATTGCTTAA
EST: AGGACTGACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGANGG ATTTTCTCGTGGGGAAAAAGTTCAT
genomic: AGGACTGACAAGACGGCATTTGTATACCTTTATCATGGATTATCTGAGGGgtaagtcatc ... tttgagccagATTTTCTCGTGGGGAAAAAGTTCAT
atgctcaagtagctgtctctcataccttaattatgaatttttctctttgagccagATTTTCTCGTGGGGAAAAAGTTCATTTTACCATCATTCCGTGATTGCTTAAAGGAACGTGGAACTGTGCAGATGCTGACGATAGGTCGTGAGGCTGCAAT
tttttctcttt CT-rich tract
ttaattatgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaaatgctttcctttcgctttggctctgtcctacccgactgatgctcaagtagctgtctctcataccttaattatgaatttttctctttgagccagATTTTCTCGTGGGGAAAAAGTTCATTTTACCATCATTCCGTGATTGCTTAAAGGAACGTGGAACTGTGCAGATGCTGACGATAGGTCGTGAGGCTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - tgctttc
- - - - - - - - - - gctttgg
- - - - - - - - - - - - - - - - -cctaccc
- - - - - - - - - - - - - - - - - - - - - ctgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacct