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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatgtgtgagagttttgacactcttaaattgaaaccaaatatttcgtaaaataatctaaccttttttgtctttctatttattcattcttaatactgcagCCCCAAATTGAAAGTGGTGACAAAA

Basic information

species Glycine max
transcript GLYMA08G05030.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269563|gb|BM885819.1|BM885819
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|13312371|gb|BG406022.1|BG406022
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|192296041|gb|FG993404.1|FG993404
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|37994740|gb|CF806346.1|CF806346
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|192325065|gb|FK016176.1|FK016176
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|15816027|gb|BI788302.1|BI788302
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|254326846|gb|GR836455.1|GR836455
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|209716428|gb|BW653869.1|BW653869
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|16996631|gb|BM086003.1|BM086003
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|209712046|gb|BW674191.1|BW674191
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|14125023|gb|BG789461.1|BG789461
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|192309316|gb|FK000524.1|FK000524
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|254313714|gb|GR831343.1|GR831343
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|298172847|gb|HO019831.1|HO019831
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|17153552|gb|BM143485.1|BM143485
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|4304277|gb|AI443596.1|AI443596
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|213604953|gb|DB956328.1|DB956328
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|192330755|gb|FK022018.1|FK022018
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|24205916|gb|BU965169.1|BU965169
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|213599556|gb|DB968353.1|DB968353
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATTGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA
EST: gi|23727320|gb|BU761687.1|BU761687
EST:     CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG                         CCCCAAATCGAAAGTGGTGACAAAA
genomic: CATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGgttcggattc ... aatactgcagCCCCAAATTGAAAGTGGTGACAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtaaaataatctaaccttttttgtctttctatttattcattcttaatactgcagCCCCAAATTGAAAGTGGTGACAAAA
                          tttctatttattcatt  TA-rich tract