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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggatttgaccattttgtctgttcctcgttccctatgtctttctgtttattctaagtcagcaactgagcactgttcttgttttatatgttgatgtacagTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGG

Basic information

species Glycine max
transcript GLYMA08G04760.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287661|gb|BI471552.1|BI471552
EST:     TACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAG                         TTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCAT
genomic: TACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGgtttgtcctt ... tgatgtacagTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattctaagtcagcaactgagcactgttcttgttttatatgttgatgtacagTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGG
                                          tgttgat  putative branch site (score: 4)
                             ttcttgttttatat  TA-rich tract