1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgctgtcagcaattatgcattttgctgcatcttgcatttttgcatgacctgttaatgtactacataaaaattacgtacttgttatatttcatgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTT
species | Glycine max |
transcript | GLYMA08G04460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG GTCTTCACTGCTGAEST: gi|13562624|gb|BG550844.1|BG550844
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGA
EST: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGEST: gi|209704856|gb|BW673467.1|BW673467
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
EST: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGEST: gi|298170101|gb|HO018725.1|HO018725
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
EST: GGGTTGTCGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGEST: gi|209726516|gb|BW658083.1|BW658083
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
EST: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
tgacctgttaatgtactacataaaaattacgtacttgttatatttcatgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTT
tgttaat putative branch site (score: 3)
ttaatgtactacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctgtcagcaattatgcattttgctgcatcttgcatttttgcatgacctgttaatgtactacataaaaattacgtacttgttatatttcatgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-tgctgtc
- - - - - - - - tgcattt
- - - - - - - - - - - - -ctgcatc
- - - - - - - - - - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacttg