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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttatttcattttattttatttttctcattttatcttgatatatgaagaattaacataagccagcatatcaattaagcatgtgtttgcccgttacagGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG

Basic information

species Glycine max
transcript GLYMA08G04110.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04110.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g03560.t01 (Vitis vinifera), 3'ss of exon 3
--------atttttatttcattttattttatttttctcattttatcttgatatatgaagaattaacataagccagcatatcaattaagcatgtgtttgcccgttacagGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG
         |   |  |||| ||  |   |     |  | ||| | || |   | |     |   ||| | ||| | | | | ||     | | |      |   ||||| |||||||| || ||||||||||||||||| |||||||| || || || |||||||| || |||
agaagaaagtagatcgttcacttggtagaaagc--caaaatttcttttcacccacg-----tcctcatcatccaac-tcttatttttatgtatttaatttggaatcagGTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204015|gb|BI426783.1|BI426783
EST:     CATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACCTTCAAG                         GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTT
genomic: CATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACCTTCAAGgtattttcat ... cccgttacagGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaagaattaacataagccagcatatcaattaagcatgtgtttgcccgttacagGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG
      aattaac  putative branch site (score: 2)
                                         tttgccc  putative PPT
      aattaacataa  TA-rich tract