1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttctgttttcaaagagaacactcttctactaggtttctctttgtttctcagacattcgttgactcagcatggtaatctgacttcatggtttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCCTGGATATGCGCGTTGCTGCTCTA
species | Glycine max |
transcript | GLYMA08G03730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGCG GTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCC-TGGAAAAAATTGGCEST: gi|208024592|gb|GD825594.1|GD825594
genomic: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGCGgtaattcttg ... ttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGC
EST: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGTG GTTGGTGAAGATGTGGTGGGAGAAEST: gi|21676721|gb|BQ629072.1|BQ629072
genomic: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGCGgtaattcttg ... ttgtttgtagGTTGGTGAAGATGTGGTGGGAGAA
EST: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGTG GTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCEST: gi|120533561|gb|EH261694.1|EH261694
genomic: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGCGgtaattcttg ... ttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGC
EST: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGCG GTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGG
genomic: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGCGgtaattcttg ... ttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGC
ttctcagacattcgttgactcagcatggtaatctgacttcatggtttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCCTGGATATGCGCGTTGCTGCTCTA
atctgac putative branch site (score: 3)
tttgttt putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgttttcaaagagaacactcttctactaggtttctctttgtttctcagacattcgttgactcagcatggtaatctgacttcatggtttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCCTGGATATGCGCGTTGCTGCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-ttctgtt
- - - - - -aaagagaa
- - - - - - - - - - - -cttctac
- - - - - - - - - - - - - - - - - - - - - - - - - -gacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg