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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattgcataggcaactgtaactaaaaactaaaagaaaaaacgtgtaaggaaattgcctctattttaccatcctaatcatcacactgtttatcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATA

Basic information

species Glycine max
transcript GLYMA08G03070.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03070.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 3
-cattgcataggcaa--ctgtaactaaaaactaaaagaaaaaacgtgtaaggaaattgcctctattttaccatcctaatcatcacactgtttatcaa-tgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATA
   ||  |  | |||  || |  ||   ||| || |     ||    |     |||    | | ||| |   ||||| |  |     | ||||||   || |||| ||| |  | ||| |||||||||||| ||||||||||||||||||| |||| ||||  || || |||||||||||||||||||||||| |||| |||||
atcttaaaatgtcaaagctttggctctcaacaaatattgttaattatttgttcaatgaaatatttttcat-gtcctatttgttg---tatttatctgctggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326778|gb|FK018905.1|FK018905
EST:     GGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCA                         GAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG
genomic: GGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagcttta ... tcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG
EST: gi|20813131|gb|BQ297609.1|BQ297609
EST:     GGTGTATGAATACATGGCCAGTGGGAGCTTGGAGAAACATCTTTT-CGCA                         GAGTGGGCTCAACAT-GACTTGGTCAAAAAGA-TGAAGATTGCTTTACATG
genomic: GGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagcttta ... tcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG
EST: gi|298188842|gb|HO035535.1|HO035535
EST:     ATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCA                         GAGTGGGCTCAACATTGGCTTGGTCAAAAAGAATGAAGATTGCTTTACATG
genomic: ATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagcttta ... tcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggaaattgcctctattttaccatcctaatcatcacactgtttatcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATA
                        tcctaat  putative branch site (score: 2)
            tctatttta  TA-rich tract