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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaacttgaacccaaaattttcttttacgctatatatacatcttttactagtaattctaaagcaatatggcctaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcactgaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCAGAATATTTGGGGGGTGCCATAACGTGTGATGCTCATCACATGACTGATC

Basic information

species Glycine max
transcript GLYMA08G02850.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 3
gtagaaacttgaacccaaaattttcttttacgctatatatacatcttttactagtaattctaaagcaatatggcctaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcactgaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCAGAATATTTGGGGGGTGCCATAACGTGTGATGCTCATCACATGACTGATC
|||  |||   ||    |  || ||||     ||  || | |   | ||  ||  || ||        || |    | |   ||||  ||| |  ||     |    |  || |   | || | |||  | |||       ||||| | |||||||||||||||  |||||  ||||| |||||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| ||||| ||||
gtaataac--aaaattgatgttgtcttcattacttgatttgctagtattg-taacaactcatttatgttaggctgcatcttattttcatttgattttgggacttcatatttacta--agctcggttcattgtca-------aaaagATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448546|gb|BQ252670.1|BQ252670
EST:     GGGACAAAGATCGTCATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTG                         GTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCA
genomic: GGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaactt ... gaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttacttttgttcacctaatgacaacttgattctctatcactgaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCAGAATATTTGGGGGGTGCCATAACGTGTGATGCTCATCACATGACTGATC
                                            tgaaaaaaaa  TA-rich tract